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Fencer Vulns
medium 4.4

CVE-2026-116742 json

HTSlib through 1.24 Heap Out-of-Bounds Write via Truncated .gzi Index Count

published 2026-10-26 13 d ago modified 2026-10-27 12 d ago also EUVD-2026-110490

cvss
4.4
version 3.1, CNA
cisa kev
Not listed
not in CISA's catalog
epss
0.1%
EPSS 0.1% chance of exploitation in 30 days, percentile 2%
public exploits
0
none known

Summary

HTSlib through 1.24 contains a heap out-of-bounds write and read vulnerability in bgzf_index_load_hfile() in bgzf.c that allows attackers to corrupt heap memory by supplying a crafted .gzi index entry count. A count of 0xFFFFFFFF truncates noffs to zero, causing writes past a malloc(0) buffer and an offs[-1] read in bgzf_useek(), resulting in heap corruption or crashes in tools like samtools and bcftools.

Patch / fix

Vendor advisories

What the vendors themselves say about their products: affected, fixed or not affected, and what to do.

red hat product security vex CVE-2026-116742 updated cvss 4.4

htslib: htslib: Denial of Service via crafted index file

  • Red Hat All currently supported Red Hat products
    not affected: vulnerable code not present

Red Hat CSAF VEX © Red Hat, Inc., from https://security.access.redhat.com/data/csaf/v2/vex/; changed: reduced to product statuses and remediations. CC BY 4.0 · csaf

CISA SSVC

Exploitation
none
Automatable
no
Technical impact
partial
Assessed
12 d ago

Exploit prediction

0.12% chance of exploitation in the next 30 days, higher than 2% of all scored CVEs (FIRST EPSS, 2026-11-08).

CVSS scores

assigned by version score vector
CNA 4.0 4.8 CVSS:4.0/AV:L/AC:L/AT:N/PR:N/UI:P/VC:N/VI:L/VA:L/SC:N/SI:N/SA:N
CNA 3.1 4.4 CVSS:3.1/AV:L/AC:L/PR:N/UI:R/S:U/C:N/I:L/A:L
CNA 4.0 4.8 CVSS:4.0/AV:L/AC:L/AT:N/PR:N/UI:P/VC:N/VI:L/VA:L/SC:N/SI:N/SA:N/E:X/CR:X/IR:X/AR:X/MAV:X/MAC:X/MAT:X/MPR:X/MUI:X/MVC:X/MVI:X/MVA:X/MSC:X/MSI:X/MSA:X/S:X/AU:X/R:X/V:X/RE:X/U:X

Affected products

  • samtools htslib

Classification

Weakness

References

Sources

Fencer Vulns keeps one entry per vulnerability: the CVE id wins, then GHSA, and records that alias each other are merged, except that two CVEs always keep separate entries. The same data is available as JSON.